Dear All,
I need to split a fastq file in two files in which there is one pair in one and the other pair in the other. It looks that CLC needs to files to select pair ends reads. the file now looks like this:
>ILLUMINA-52179E_0050_FC70G0HAAXX:6:1:2997:934#GCCAAT/1
TACCACCCAGGCCCCGTCTATCTATATCATCACTCGATTTATTATCCTCTAGTAATCCTCCCGAAATCCCTGAA
>ILLUMINA-52179E_0050_FC70G0HAAXX:6:1:2997:934#GCCAAT/1
quality line
>ILLUMINA-52179E_0050_FC70G0HAAXX:6:1:2997:934#GCCAAT/2
TCCTGAGTCAATTGCAGAGCAGTTTCATTTCTATGAGCATGATTCTTCGGCATAAAAGTCGAGCATGAACTATGT
>ILLUMINA-52179E_0050_FC70G0HAAXX:6:1:2997:934#GCCAAT/2
quality line
thanks in advance
Luigi
I need to split a fastq file in two files in which there is one pair in one and the other pair in the other. It looks that CLC needs to files to select pair ends reads. the file now looks like this:
>ILLUMINA-52179E_0050_FC70G0HAAXX:6:1:2997:934#GCCAAT/1
TACCACCCAGGCCCCGTCTATCTATATCATCACTCGATTTATTATCCTCTAGTAATCCTCCCGAAATCCCTGAA
>ILLUMINA-52179E_0050_FC70G0HAAXX:6:1:2997:934#GCCAAT/1
quality line
>ILLUMINA-52179E_0050_FC70G0HAAXX:6:1:2997:934#GCCAAT/2
TCCTGAGTCAATTGCAGAGCAGTTTCATTTCTATGAGCATGATTCTTCGGCATAAAAGTCGAGCATGAACTATGT
>ILLUMINA-52179E_0050_FC70G0HAAXX:6:1:2997:934#GCCAAT/2
quality line
thanks in advance
Luigi
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