Hi,
I wish to plot coverage profiles for each of the chromosomes from my BAM files which I obtained after aligning exome sequencing data (hg19).
I had initially thought of using samtools to generate pileup files, and then plot them however, that would take a long time and I guess that would be an inefficient way to go about it.
Are there any R/other packages that can quickly help me get these plots ?
Any suggestions would be much appreciated.
I wish to plot coverage profiles for each of the chromosomes from my BAM files which I obtained after aligning exome sequencing data (hg19).
I had initially thought of using samtools to generate pileup files, and then plot them however, that would take a long time and I guess that would be an inefficient way to go about it.
Are there any R/other packages that can quickly help me get these plots ?
Any suggestions would be much appreciated.
Comment