Tweet
ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. Morgan M, Anders S, Lawrence M, Aboyoun P, Pagès H, Gentleman R.
Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA. [email protected]
ShortRead is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources. AVAILABILITY AND IMPLEMENTATION: This package is implemented in R and available at the Bioconductor web site; the package contains a 'vignette' outlining typical work flows.
Bioinformatics. 2009 Oct 1;25(19):2607-8. Epub 2009 Aug 3.
Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA. [email protected]
ShortRead is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources. AVAILABILITY AND IMPLEMENTATION: This package is implemented in R and available at the Bioconductor web site; the package contains a 'vignette' outlining typical work flows.
Bioinformatics. 2009 Oct 1;25(19):2607-8. Epub 2009 Aug 3.