Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Samtools "is recognized as '*'" "truncated file" error axiom7 Bioinformatics 3 11-26-2014 02:53 AM
Are there any good ways to use SAMtools java API to convert .bam file into .txt file? alextree Bioinformatics 8 01-24-2012 09:20 AM
Samtools IO error unagaswamy Bioinformatics 1 11-04-2010 10:12 AM
Error indexing BAM file using samtools veena Bioinformatics 9 03-04-2010 03:52 AM
samtools error ? mattanswers Bioinformatics 0 11-30-2009 01:36 PM

Thread Tools
Old 07-18-2011, 02:41 AM   #1
Junior Member
Location: Israel

Join Date: May 2011
Posts: 2
Default Error massages from samtools to a file

While running samtools calmd, I get a lot of massages about changing the MD:Z.
How can I send those massages to a file instead of the screen?
nergaon is offline   Reply With Quote
Old 07-19-2011, 03:04 AM   #2
Location: Cambridge, UK

Join Date: Sep 2009
Posts: 37

Have you tried adding '2>somefile' to the command line?
vadim is offline   Reply With Quote

error_management, samtools calmd

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 07:20 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO