I have some small RNA data, generated with a GAIIx, and I need to trim the adapter sequence off the 3' end. I used cutadapt, which seemed easy enough, but now I can't get the trimmed sequences to align in Maq. I keep getting this error:
maq: match.cc:569: int ma_match(int, char**): Assertion `size_l >= 12 && (size_r == 0 || size_r >= 12)' failed.
Any help would be greatly appreciated!
Thanks,
Chris.
maq: match.cc:569: int ma_match(int, char**): Assertion `size_l >= 12 && (size_r == 0 || size_r >= 12)' failed.
Any help would be greatly appreciated!
Thanks,
Chris.
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