Hi All,
I have a pair-end and single-end data from two difference illumina runs (the same biological sample). What are the best way to combine both data sets for downstream analysis?
1. Combine FASTQ/QSEQ from both run, then align with a aligner?
2. Align each individual data set, then combine BAMs file together?
Thanks,
Ng
I have a pair-end and single-end data from two difference illumina runs (the same biological sample). What are the best way to combine both data sets for downstream analysis?
1. Combine FASTQ/QSEQ from both run, then align with a aligner?
2. Align each individual data set, then combine BAMs file together?
Thanks,
Ng
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