SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Implications from comparing cDNA to cds mapping sisch General 6 07-05-2011 11:20 PM
Blat parameters for mapping short sequences clatrinajes Bioinformatics 2 05-19-2011 03:28 AM
Bowtie poroblem when mapping against short sequences, no positions. Boel Bioinformatics 1 01-14-2011 08:54 AM
Mapping against multiple sequences michaelDP Metagenomics 2 10-15-2010 09:22 AM
Mapping reads with adapter sequences using MAQ seq_GA Bioinformatics 1 11-05-2009 10:32 PM

Reply
 
Thread Tools
Old 07-06-2009, 01:33 PM   #1
gaster
Member
 
Location: MA

Join Date: May 2009
Posts: 17
Default comparing sequences and mapping annotations?

We have two sequences with a little divergence and no large-scale rearrangments (ie gene order and number are probably maintained). One sequence is already annotated. We are trying to find a way to just map the annotations of one onto the other (then we would just proof it by hand). It seems like it should be easy but no programs that we can find allow it. For instance, although Mauve will align the two sequences, the output file only lists the annotation coordinates of the reference sequence (not the new sequence).

Any ideas? Has anyone done something like this comparing and annotating different strains.

Any help is mightily appreciated!
gaster is offline   Reply With Quote
Reply

Tags
annotation, assembly, bioinformatics, compar, edit

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 07:09 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO