Hi,
I tried to run bowtie2 on bam files which I previously converted from fastq using BCL2BAM2FASTQ fastq2bam and then trimmed using leeHom, however, it consistently aborts (tried with 18 different input files)
bowtie2 -x mitogenomes --phred33 -b sample1.bam > SAMPLE1.sam
(ERR): bowtie2-align died with signal 11 (SEGV) (core dumped)
Can anyone comment on what may be the problem?
thanks!
I tried to run bowtie2 on bam files which I previously converted from fastq using BCL2BAM2FASTQ fastq2bam and then trimmed using leeHom, however, it consistently aborts (tried with 18 different input files)
bowtie2 -x mitogenomes --phred33 -b sample1.bam > SAMPLE1.sam
(ERR): bowtie2-align died with signal 11 (SEGV) (core dumped)
Can anyone comment on what may be the problem?
thanks!