Tweet
VCFs have an INFO column that contains many sub-categories, depending on the annotations available at the time of calling. Is there a method of sorting VCFs using the sub field info? This would seem like powerful use of the format. If you know of anything or want to do the coding yourself, let me know please!
-
-
I wrote a tool to sort a VCF on the INFO field https://github.com/lindenb/jvarkit/wiki/SortVCFOnInfo
-
Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...04-04-2024, 04:25 PM -
Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...03-22-2024, 06:39 AM
Comment