Hi all,
I am really new to bioinformatics and tools such as PLINK.
I am running commands on plink data created from whole genome information. I use PLINK to search for runs of homozygosity.
Running the default option (plink --bfile <nameoffile> --homozyg) works, but as soon as I want to change default settings, for example:
plink --bfile <nameoffile> --homozyg-window-kb 1000 it gives me this error:
"Error: --homozyg-window-kb flag povisionally retired, since it had no effect in PLINK 1.07"
I do not understand this error, since I am using PLINK 1.9 (I used module load and it is also the version that comes up when i use the which command).
Can anyone help me with this? I really need to specify my own parameter settings.
Many thanks!
I am really new to bioinformatics and tools such as PLINK.
I am running commands on plink data created from whole genome information. I use PLINK to search for runs of homozygosity.
Running the default option (plink --bfile <nameoffile> --homozyg) works, but as soon as I want to change default settings, for example:
plink --bfile <nameoffile> --homozyg-window-kb 1000 it gives me this error:
"Error: --homozyg-window-kb flag povisionally retired, since it had no effect in PLINK 1.07"
I do not understand this error, since I am using PLINK 1.9 (I used module load and it is also the version that comes up when i use the which command).
Can anyone help me with this? I really need to specify my own parameter settings.
Many thanks!
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