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Old 11-19-2014, 08:08 AM   #1
Location: UK

Join Date: Feb 2014
Posts: 60
Default Help creating phylogenetic map

I currently have a list of taxonID's which I have obtained by blast identification of the contigs within my metagenomic assembly. I have tried using Phylot to create a tree and then iTOL to display it which worked.

However I want to make the graph more descriptive by having each major group named on the map and the counts within each group displayed as bars on the outside. I know this can be done as it is with their tree of life graph but as I am new to this I have no idea of the correct input for displaying it in such a way.

If anyone can help it will be greatly appreciated.

thh32 is offline   Reply With Quote
Old 11-19-2014, 11:01 PM   #2
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Location: Eugene, OR

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Have you tried MetaPhlan2 and GraPhlan to make figures like this?

It sounds like you have a specific idea of how you want to display your data (which is fine!), but sometimes showing a familiar style helps the reader too.
Providing nextRAD genotyping and PacBio sequencing services.
SNPsaurus is offline   Reply With Quote
Old 11-19-2014, 11:37 PM   #3
Location: Jerusalem

Join Date: Jul 2014
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Look at iTOL help page under "Uploading and working with your own trees" to display bars. I think the only way to mark a group is by coloring it. After you upload the tree click on "Define color ranges" and manually color each node.
Asaf is offline   Reply With Quote

itol, phylogenetic analysis, phylogenetic tree, taxonomic id

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