|
|
|
|
|||||||
Similar Threads
|
||||
| Thread | Thread Starter | Forum | Replies | Last Post |
| Using GATK's local realigner outside of GATK pipeline for variant calling | NikTuzov | Bioinformatics | 1 | 09-08-2015 09:41 AM |
| Calling SNPs from RNAseq bam files | jmwhitha | Bioinformatics | 7 | 10-15-2014 05:16 AM |
| calling variants using GATK | kjaja | Bioinformatics | 0 | 03-19-2013 11:39 AM |
| GATK UnifiedGenotyper not calling any variants | krobasky | Bioinformatics | 7 | 10-25-2012 11:19 PM |
| GATK calling Merged Bam files | jayce_ocean | Bioinformatics | 3 | 03-16-2011 01:15 AM |
 |
|
|
Thread Tools |
07-19-2017, 12:13 PM
|
#1 |
|
Member
Location: UK Join Date: Nov 2010
Posts: 49
|
RNAseq bam to variants calling (GATK, Mutect1/2
Has anyone prepped rnaseq bam files for mutect/gatk? i found some pdf with pipeline schematics, but could not understand step by step prep. what are tools/settings needed to preprocess bam for mutect/gatk pipeline ?
thanks! |
|
|
|
| Thread Tools | |
|
|
