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Old 01-31-2012, 10:11 AM   #1
ccstaats
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Default Graphical visualization of GFT files

Hello all
Using tophat, cufflinks and cuffmerge, I found lots of new genes.
I would like to graphically visualize the information of the GFT files in the genome sequence (something like artemis).
Do you know of a software to do this? Or, converting the GFT file to another format would make it possible?
Thank you in advance.
Charley
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Old 01-31-2012, 12:52 PM   #2
jjohnson
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I assume you mean GTF file right? Check out IGV from the Broad (http://www.broadinstitute.org/igv/)
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Old 02-01-2012, 07:36 AM   #3
ccstaats
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Thank you.
It helps a lot
Charley
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