Introducing DARIO, a web service for the analysis of small RNA-seq data

mfasold · 06-27-2011, 02:49 AM

Hi,

we would like to point the community to a web tool we have recently developed.

DARIO is a web service for the analysis of short RNAs from high throughput sequencing data. It features

fast and convenient analysis of small RNA-seq data (short RNA-seq protocol)
no dependencies to any sequencing platform or mapping tool (convert from common SAM format)
differential expression: direct comparison of expressions from several DARIO runs due to RPM normalization
upload of own annotations or regions of interest
prediction of new putative ncRNAs using a machine learning approach
additional validation of predicted ncRNAs using RNAz

Files can be uploaded in BED or BAM format. The website currently supports seven assemblies of six species: human (hg18, hg19), rhesus monkey (rheMac2), mouse (mm9), fruit fly (dm3), worm (ce6) and zebrafish (danRer6).

Any comments and suggestions appreciated.

URL: http://dario.bioinf.uni-leipzig.de/

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
RNA-Seq: DEB: A web interface for RNA-seq digital gene expression analysis.	Newsbot!	Literature Watch	6	02-06-2012 05:55 AM
RNA-Seq: ExpressionPlot: A web-based framework for analysis of RNA-Seq and microarray	Newsbot!	Literature Watch	0	07-30-2011 04:00 AM
RNA-Seq: Data partitioning enables the use of standard SOAP Web Services in genome-sc	Newsbot!	Literature Watch	0	07-27-2011 03:00 AM
RNA-Seq: DARIO: a ncRNA detection and analysis tool for next-generation sequencing ex	Newsbot!	Literature Watch	0	05-31-2011 03:40 AM
GenomeQuest offers easy-to-use ChIP-Seq workflow as web cloud service	GenomeQuest	Vendor Forum	0	11-12-2009 08:41 AM

06-27-2011, 02:49 AM	#1
mfasold Junior Member Location: Leipzig, Germany Join Date: Jun 2011 Posts: 1	Introducing DARIO, a web service for the analysis of small RNA-seq data Hi, we would like to point the community to a web tool we have recently developed. DARIO is a web service for the analysis of short RNAs from high throughput sequencing data. It features fast and convenient analysis of small RNA-seq data (short RNA-seq protocol) no dependencies to any sequencing platform or mapping tool (convert from common SAM format) differential expression: direct comparison of expressions from several DARIO runs due to RPM normalization upload of own annotations or regions of interest prediction of new putative ncRNAs using a machine learning approach additional validation of predicted ncRNAs using RNAz Files can be uploaded in BED or BAM format. The website currently supports seven assemblies of six species: human (hg18, hg19), rhesus monkey (rheMac2), mouse (mm9), fruit fly (dm3), worm (ce6) and zebrafish (danRer6). Any comments and suggestions appreciated. URL: http://dario.bioinf.uni-leipzig.de/