|
|
|
|
|||||||
Similar Threads
|
||||
| Thread | Thread Starter | Forum | Replies | Last Post |
| CummeRbund questions | glados | Bioinformatics | 15 | 07-10-2017 03:13 AM |
| cummeRbund get isoforms | paolo.kunder | Bioinformatics | 6 | 04-23-2014 08:59 AM |
| Problem with cummeRbund and RSQLite :( | dadada4ever | Bioinformatics | 3 | 07-31-2013 10:13 AM |
| cummeRbund installation | m_elena_bioinfo | Bioinformatics | 3 | 08-02-2012 02:42 AM |
| CummeRbund error without CDS | dvanic | Bioinformatics | 5 | 03-12-2012 10:24 AM |
 |
|
|
Thread Tools |
04-20-2012, 06:48 AM
|
#1 |
|
Member
Location: California US Join Date: Aug 2011
Posts: 19
|
CummeRbund Volcanoplot error
HI,
I am a newbie and I started using cummeRbund about two weeks. few days ago I upgraded the R version to 2.15 and cummerbund to 1.2. ever since, when I try to plot volcanoplot I get a following error. > cufdat2b=readCufflinks('diff_out_2b/') > csVolcano(genes(cufdat2b),'C','P') Error in eval(expr, envir, enclos) : object 'log2_fold_change' not found Can some one tell me what is wrong? Thank you. |
|
|
|
04-20-2012, 11:50 AM
|
#2 |
|
Member
Location: California US Join Date: Aug 2011
Posts: 19
|
The solution to the problem was to rebuild the database.
>library(cummerbund) >cuff<-readCufflinks(rebuild=T) After rebuilding it worked fine. Thank you. |
|
|
|
|
| Tags |
| cummerbund |
| Thread Tools | |
|
|
