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Old 08-23-2012, 03:23 AM   #1
Junior Member
Location: UK

Join Date: Jul 2012
Posts: 6
Default 2. PubMed ids in SRA and GEO [and other repositories?]

We have been exploring the metadata fields in SRA and GEO. We have observed a lot of PubMed ids in SRA and GEO. (But not the reverse, i.e., the corresponding PubMed publications do not always cite the repository accession numbers for the datasets.)
Our questions are,
- who puts the PubMed ids into these submissions and when? Is it the data producers? Or the repository curators?
- Who puts pubmed ids in SRA and GEO and why?

Thank You.
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Old 08-23-2012, 09:04 AM   #2
Devon Ryan
Location: Freiburg, Germany

Join Date: Jul 2011
Posts: 3,480

Given the number of questions you've posted related to GEO and the SRA, don't you think it might be more efficient to just email or call someone that works on GEO? Their contact address is
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