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Thread Tools |
03-25-2014, 12:37 AM
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#1 |
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Member
Location: china Join Date: Aug 2013
Posts: 18
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TCGA mRNA data
hi,
I have downloaded some cancer level3 mRNA data from TCGA. Are there matched-normal tissue samples in data set ? or just cancer sample ? |
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03-25-2014, 07:07 AM
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#2 |
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Senior Member
Location: Budapest Join Date: Mar 2010
Posts: 329
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As far as I know those are cancer samples only.
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03-27-2014, 11:03 AM
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#3 |
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Registered Vendor
Location: San Francisco, CA Join Date: Mar 2014
Posts: 18
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Hi,
There are actually adjacent normals available for a subset of patients per cohort that were profiled by RNA-Seq, while the DNA sequence variation data (genomes, exomes) is generated from matched tumor-normal pairs for the most part. You can easily browse and analyze all the level 3 mRNA data in GenePool's freely available genomics reference library which currently includes all of the RNA-SeqV2 gene-level counts along with curated sample metadata attached to the samples. I trust you'll find that GenePool makes the TCGA data and other large cohorts of genomics data + metadata easily approachable and usable by the research community. For more information about GenePool's growing genomics library, check out the following threads: http://seqanswers.com/forums/showthread.php?t=42471 http://seqanswers.com/forums/showthread.php?t=48485 ------------------------------ GenePool is making genomics data management, analysis, and sharing easier! Products @ www.stationxinc.com Last edited by GenePool; 11-23-2014 at 10:06 PM. |
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