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Old 11-12-2009, 08:41 AM   #1
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Location: Boston

Join Date: Jul 2009
Posts: 21
Default GenomeQuest offers easy-to-use ChIP-Seq workflow as web cloud service

Hi Everyone,

We’ve released our ChIP-Seq workflow this week, available to anyone with a Free Basic Account inside of GenomeQuest. Like all of our NGS workflows, it runs in two basic steps: a mapping step and a downstream analysis step. We chose the MACS modeling software for peak modeling.

The GenomeQuest ChIP-Seq workflow outputs a heavily annotated sequence database, which can then be interactively filtered, grouped, sorted, and mined for peaks of interest. And this can all be connected to your RNA-Seq and resequencing data to get the global picture.

Researchers can go from their ChIP-Seq NGS runs directly to gene-based annotation of the peaks found by their biology, select regions of interest, or genes of interest, or peaks of a certain class, and drill down to see the actual evidence that backs up the call.

Please take a few minutes to view the ChIP-Seq video overview, provided by Henk Heus, Senior Director of Workflow Development.

Also, for a limited time, we are offering a 30-Day free Silver Account to the first 100 qualified registrants. If you are interested in this, please visit

I invite your comments, questions, and suggestions.

Richard Resnick
VP, Software and Services
GenomeQuest is offline   Reply With Quote

chip-seq, macs, resequencing data, rna-seq

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