Paired end Short read data

SS1234 · 06-09-2010, 08:03 AM

Hi there ,

I am new to this field. Can anybody tell me where could I get the Paired end short reads data?

Thanks.

nilshomer · 06-09-2010, 09:38 AM

Quote:

Originally Posted by SS1234

Hi there ,

I am new to this field. Can anybody tell me where could I get the Paired end short reads data?

Thanks.

Do you have a sequencing machine or are you looking for publicly available data?

SS1234 · 06-09-2010, 10:52 AM

I am looking for publicly available data.

Thanks.

nilshomer · 06-09-2010, 10:54 AM

Quote:

Originally Posted by SS1234

I am looking for publicly available data.

Thanks.

Try the sequence read archive.

lmf_bill · 06-09-2010, 11:14 AM

Try the sequence read archive (SRA) in NCBI entry

SS1234 · 06-09-2010, 11:31 AM

Thanks nilshomer and Imf bill

john_mu · 06-09-2010, 02:16 PM

Another place is GEO, if you want RNA-seq data

http://www.ncbi.nlm.nih.gov/geo/

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06-09-2010, 08:03 AM	#1
SS1234 Junior Member Location: USA Join Date: Jun 2010 Posts: 3	Paired end Short read data Hi there , I am new to this field. Can anybody tell me where could I get the Paired end short reads data? Thanks.

06-09-2010, 10:52 AM	#3
SS1234 Junior Member Location: USA Join Date: Jun 2010 Posts: 3	@ nilshomer I am looking for publicly available data. Thanks.

06-09-2010, 11:31 AM	#6
SS1234 Junior Member Location: USA Join Date: Jun 2010 Posts: 3	@ every one replied Thanks nilshomer and Imf bill

06-09-2010, 02:16 PM	#7
john_mu Member Location: Stanford, CA Join Date: May 2010 Posts: 88	Another place is GEO, if you want RNA-seq data http://www.ncbi.nlm.nih.gov/geo/ __________________ SpliceMap: De novo detection of splice junctions from RNA-seq Download SpliceMap Comment here

06-09-2010, 11:14 AM	#5
lmf_bill Member Location: New Haven Join Date: Jul 2008 Posts: 36	Try the sequence read archive (SRA) in NCBI entry