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Old 07-19-2017, 12:13 PM   #1
Location: UK

Join Date: Nov 2010
Posts: 49
Default RNAseq bam to variants calling (GATK, Mutect1/2

Has anyone prepped rnaseq bam files for mutect/gatk? i found some pdf with pipeline schematics, but could not understand step by step prep. what are tools/settings needed to preprocess bam for mutect/gatk pipeline ?
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