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Old 11-15-2010, 07:26 AM   #1
jiexiong
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Location: china

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Default find ORFs for cufflinks assembled transcripts

Hi,
I have used the cufflinks assembled the transcripts(mrna) from RNA-SEQ experiment.
my purpose is to check the possible length of the UTRs of each transcripts, and i should firstly find the best ORF for each transcripts, is there any tool for batch find the best ORF?
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Old 05-08-2014, 01:26 PM   #2
tinkering
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you may try the "getorf" tool of EMBOSS suit.
it is downloadable from: http://emboss.sourceforge.net/download/

pls ref, to manual:
http://emboss.sourceforge.net/apps/c...ps/getorf.html
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