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Old 11-15-2010, 07:26 AM   #1
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Location: china

Join Date: May 2010
Posts: 9
Default find ORFs for cufflinks assembled transcripts

I have used the cufflinks assembled the transcripts(mrna) from RNA-SEQ experiment.
my purpose is to check the possible length of the UTRs of each transcripts, and i should firstly find the best ORF for each transcripts, is there any tool for batch find the best ORF?
jiexiong is offline   Reply With Quote
Old 05-08-2014, 01:26 PM   #2
Location: Boston

Join Date: Mar 2013
Posts: 11

you may try the "getorf" tool of EMBOSS suit.
it is downloadable from:

pls ref, to manual:
tinkering is offline   Reply With Quote

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