Hi there, well I presented an annoying problem with blast. The problem is the next:
We are triying to aling a metagenomic sequence project with local blast, using software packages included in biolinux 6. but when it's running appears this error.
We can't associate this problem to my computer who is equipped with a AMD phenom II 1090T, cause we are presenting the same trouble with 3 dell vostro who uses intel core i7 2600, all of them, with 8gb of RAM.
we tried to re-run this alignment again but the trouble continues.
We are running this with xargs, as is showed in this line. With 3000 sequences per file (1 file per core)
The error appears at 10 or 12 hours of started the alignment.
I'll be really thankful if somebody can give me an idea.
Sincerely, oscar
We are triying to aling a metagenomic sequence project with local blast, using software packages included in biolinux 6. but when it's running appears this error.
Error: basic_string::substr
xargs: blastx: acabó con estado 255; abortando
xxxx@xxxx-desktop[4-jul-2012] Error: basic_string::substr
xargs: blastx: acabó con estado 255; abortando
xxxx@xxxx-desktop[4-jul-2012] Error: basic_string::substr
we tried to re-run this alignment again but the trouble continues.
We are running this with xargs, as is showed in this line. With 3000 sequences per file (1 file per core)
xxxx@xxxx-desktop[4-jul-2012] xargs -n 14 -P 3 -a arguments blastx
I'll be really thankful if somebody can give me an idea.
Sincerely, oscar
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