Hi All,
We have done a RNAseq and aligned the reads against the genome (there is no introns in here) using bowtie. I also have BAM/SAM output files. I am looking for a viewer to view the alignment.
I tried MapView. Works good. But, there is no way to display the genome annotation information
others like signalmap, artemis display only the coverage but not the reads themselves. ANy suggestion. I tried lookseq. I have problem setting that up.
Gowtham
We have done a RNAseq and aligned the reads against the genome (there is no introns in here) using bowtie. I also have BAM/SAM output files. I am looking for a viewer to view the alignment.
I tried MapView. Works good. But, there is no way to display the genome annotation information
others like signalmap, artemis display only the coverage but not the reads themselves. ANy suggestion. I tried lookseq. I have problem setting that up.
Gowtham
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