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Old 02-23-2015, 02:33 AM   #1
kapr0007
Junior Member
 
Location: sweden

Join Date: Oct 2014
Posts: 5
Default adding RG tags to bam files

Hello all,

This is my first post and I'm new to bioinformatics
I am trying to add RG tags and sample ID to a list of sorted bam files, i have tried all the above mentioned scripts. i was able to add the RG tags to all my files, later calling with freebayes for SNP, my ouput vcf file has only the header part
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT L6-6

the rest is empty. could some one help me with this, all i need is after i call for SNP, i would like to have all the genotypes labeled with the specific sample IDs.

Thank you all
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Old 02-23-2015, 02:44 AM   #2
sarvidsson
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Location: Berlin, Germany

Join Date: Jan 2015
Posts: 137
Default

See http://seqanswers.com/forums/showpos...4&postcount=36

Last edited by sarvidsson; 02-23-2015 at 02:49 AM. Reason: Double posting
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