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Old 11-28-2011, 04:05 PM   #1
sixguns
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Default Ion RNA-Seq

Hi,

Does anyone know any tools can be use in Ion RNA-Seq data for junction and isoforms prediction as TOPHAT and CUFFLINKS for Illumina platform?
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Old 11-28-2011, 05:14 PM   #2
SeqAA
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You can use the two programs you just mentioned for starters. PGM data comes out as a fastq.
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