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Old 03-31-2012, 09:06 AM   #1
plefebvre
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Default Bam to Wig

Hi bioinformatics wiz
I am looking for a simple way to convert sam/bam to wig files. Does any one knows of a simple tool I may use for that (please no Unix nor Python command lines!)
Thanks
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Old 03-31-2012, 01:41 PM   #2
DWW1505
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Try SAMMate for Windows. http://asammate.sourceforge.net/sammate.html
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Old 04-02-2012, 07:59 AM   #3
plefebvre
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Worked nicely, until

17:57:40 <INFO> The total count of short reads mapped on exons is : 197807
17:57:40 <INFO> Parsing BAM file is complete.
17:57:40 <INFO> Start building coverage file in the wiggle format.
17:57:42 <WARN> The process is cancelled.

This happened for several bam files. Any idea ?
Thanks again
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