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Old 11-30-2012, 10:10 PM   #1
fanx
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Default Tools to remove duplicate reads

Hello, is there anyone aware of the difference in remove duplicate reads by using different tools. For example, the number of duplicate reads removed by cd-hit-454 and PRINSEQ is much different. Thanks.
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Old 11-30-2012, 11:55 PM   #2
zinky
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you may try Picard to do this
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Old 01-29-2013, 11:36 AM   #4
naragam
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Can somebody show how pickard does duplicate markups and how you can remove them? I can't seem to find the markings....?

Nash
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