SEQanswers

Go Back   SEQanswers > Sequencing Technologies/Companies > Ion Torrent



Similar Threads
Thread Thread Starter Forum Replies Last Post
Chip-SEq Data Analysis. S. cerevisiae.IOn-Torrent mpalegre Bioinformatics 1 02-19-2014 07:48 AM
Ion Torrent Data Analysis RonanC Ion Torrent 2 08-07-2012 03:55 PM
pipeline for ion torrent data aituka Bioinformatics 11 05-21-2012 04:08 PM

Reply
 
Thread Tools
Old 03-14-2014, 02:47 AM   #1
amandinette
Junior Member
 
Location: France

Join Date: Mar 2014
Posts: 4
Default Analysis of mate-pairs data (Ion Torrent)

Hi everybody,

I wonder if someone has experience with analysing data from mate-pair librairies and could share his/her experience with us ?

By looking at the TMAP help on the Proton server, I have seen that there is a "mate pairs" option in TMAP (--pairing 1) but it seems that it isn't under active development. Has someone here already tried it ?

I would be really interested in sharing experience about that.
I also have posted this question on the ion community, but I have no reply yet.

Many thanks in advance.
Cheers,
Amandinette
amandinette is offline   Reply With Quote
Reply

Tags
ion torrent, mate-paired reads, tmap

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 06:53 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO