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Old 04-26-2013, 04:34 AM   #1
srividyanathan
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Default de novo assembler for se 36 bp illumina reads

Hi,

I am wondering if there is any de novo assembler that can work with 25x coverage 36 bp solexa reads. I saw that a few requires paired end reads to work with. Some others require longer reads. Can anyone suggest any software that can work with these reads,

thank you,
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Old 04-26-2013, 05:07 AM   #2
mastal
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Default de novo assembler for se 36 bp illumina reads

Velvet should work.
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Old 05-28-2013, 08:52 AM   #3
sivasubramani
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try minia... fast and memory efficient..

Good luck..
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