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Old 10-20-2014, 03:51 AM   #1
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Location: Basel

Join Date: Oct 2014
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Default Assembler for PE-300 genomic reads

Hi everyone.
Maybe you could give me some advise for the assembly of my project.
I am doing an amplicon project sequencing 6 amplicons with sizes between 8-30 kb in several individuals of the same species (fish).
The sequencing is done paired end 300 (PE-300) on Illumina MiSeq.
I do not have the results yet but maybe you could recommend a good freeware assembler for de novo assembly that suits my project.
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