Hi Guys,
I have a bismark sam-file including 66 different targets. The next step will be to detect different subpopulations for all targets in terms of the CpG island - considering only the reads with a coverage of e.g. 80%. I am not interested in the statistics of every single CpG position. Since I have not found any tool for that, I wonder how I can do this step efficiently. What would be your approach?
Cheers!
I have a bismark sam-file including 66 different targets. The next step will be to detect different subpopulations for all targets in terms of the CpG island - considering only the reads with a coverage of e.g. 80%. I am not interested in the statistics of every single CpG position. Since I have not found any tool for that, I wonder how I can do this step efficiently. What would be your approach?
Cheers!
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