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  • SNP analysis

    Dear All,
    i am currently doing variant analysis of NF2 ,after visualisation the result ,but i am confuse my result is it correct or not? and also i couldn't find the no. of snp , rather i check the another site dbsnp , i put individually gene i.d for search but no answere has come. plz tell me how can i do it step by step?
    and also how can i identify the result or no.of snp ?
    I doubt it's a pretty and complicaited question but i am hopefull that you people can help me to sort this out..
    hoping fir a positive rply asap

  • #2
    @rinku: Perhaps the question as posted above is clear to you but I can't understand what exactly you are asking. Can you clarify?

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    • #3
      @genomax: my question is how to do vairant anaylsis of schwannomatosis @ how to find the no. of snp ?

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      • #4
        Did your "variant analysis" include some sort of alignment/calling SNP's (in NF2 gene) using your own NGS data? Or are you just trying to find all known SNP's for NF2 from dbSNP?

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        • #5
          @genomax: yes i am trying to find snp how ?

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          • #6
            For known SNP's for NF2 a simple search for dbSNP can be done like this: http://www.ncbi.nlm.nih.gov/snp/?term=NF2 You can also look at "gene view": http://www.ncbi.nlm.nih.gov/projects...gi?geneId=4771 or Variation viewer (search for NF2): http://www.ncbi.nlm.nih.gov/variation/view/

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            • #7
              @genomax: thankyou....u helpd me.now i'll sort out it....
              thankyou so much ,

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