Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • FluxSimulator Error: Java problem?

    FluxSimulatr keeps crashing:
    Code:
    [SEQUENCING] getting the
    reads
    PRO_FILE_NAME /data1/bsi/algorithm_dev/m087494_algorithm_dev/Development/FluxSimulator/demo/drosotest.pro
    SEQ_FILE_NAME /data1/bsi/algorithm_dev/m087494_algorithm_dev/Development/FluxSimulator/demo/drosotest.bed
    READ_LENGTH 100
    READ_NUMBER 200000000
    initing 
    501682308 lines submitted
    zipping ***
    501682308 lines zipped
    java.util.zip.ZipException: error in opening zip file
    at java.util.zip.ZipFile.open(Native Method)
    at java.util.zip.ZipFile.<init>(ZipFile.java:114)
    at java.util.zip.ZipFile.<init>(ZipFile.java:131)
    at genome.sequencing.rnaseq.simulation.A.g(Unknown Source)
    at genome.sequencing.rnaseq.simulation.A.run(Unknown Source)
    at genome.sequencing.rnaseq.simulation.FluxSimulator.G(Unknown Source)
    at genome.sequencing.rnaseq.simulation.FluxSimulator.run(Unknown Source)
    at genome.sequencing.rnaseq.simulation.FluxSimulator.main(Unknown Source)
    Any ideas?

  • #2
    Yes, ask the author too (in case you haven't done it yet): micha - at - sammeth .dot. net
    (don't tell him i told you to do so : )

    Comment

    Latest Articles

    Collapse

    • seqadmin
      Essential Discoveries and Tools in Epitranscriptomics
      by seqadmin




      The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
      Yesterday, 07:01 AM
    • seqadmin
      Current Approaches to Protein Sequencing
      by seqadmin


      Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
      04-04-2024, 04:25 PM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by seqadmin, 04-11-2024, 12:08 PM
    0 responses
    59 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 04-10-2024, 10:19 PM
    0 responses
    57 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 04-10-2024, 09:21 AM
    0 responses
    48 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 04-04-2024, 09:00 AM
    0 responses
    55 views
    0 likes
    Last Post seqadmin  
    Working...
    X