Hi,
I went through the forum but I couldn't find anything that does exactly what I need.
I would like to automatically search for multiple sequences (say, MLST loci) in a batch of genomes files in fasta format, then extract the results (the sequences) for further analysis. Say I want to search for a dozen loci in a list of genome files with a single command.
I guess there are scripts ready for the task, but I couldn't find.
Thanks a lot in advance!
I went through the forum but I couldn't find anything that does exactly what I need.
I would like to automatically search for multiple sequences (say, MLST loci) in a batch of genomes files in fasta format, then extract the results (the sequences) for further analysis. Say I want to search for a dozen loci in a list of genome files with a single command.
I guess there are scripts ready for the task, but I couldn't find.
Thanks a lot in advance!
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