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Old 04-01-2010, 04:26 PM   #1
Location: Bay Area

Join Date: Jan 2010
Posts: 13
Default consed newbie: how to export scaffold information

Hi, I recently ran a MIRA assembly of my 454 data and saved it to .ace file format. I can open it in consed with the -nophd function and consed will assemble the contigs using mate-pair data.

Question: how do I export the sequences of the scaffolds?

I'd like to get the scaffolds in fasta format to compare it to scaffolds made by Celera Assembler.

Thanks for your help!

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