Hi all. I have a question regarding the experimental design of ChIP-Seq. We have cells in two different states, and we would like to compare the binding profile differences between two states. Should we keep the cell amounts used in the ChIP the same?
By the way, could anyone recommend a tool to analyze the binding profile differences?
Thanks very much! Any suggestion will be greatly appreciated.
By the way, could anyone recommend a tool to analyze the binding profile differences?
Thanks very much! Any suggestion will be greatly appreciated.
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