I'm trying to run bcl2fastq with the barcode-mismatch option set to 3. Unfortunately setting this option to anything other than the default seems to result in runaway memory usage (fills and eventually kills a 128GB machine). Is this a known bug? The version I am using is:
BCL to FASTQ file converter
bcl2fastq v02.14.01.07
Copyright (c) 2007-2013 Illumina, Inc.
BCL to FASTQ file converter
bcl2fastq v02.14.01.07
Copyright (c) 2007-2013 Illumina, Inc.
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