Hi,
I am analyzing pair-end RNAseq with tophat, I want to know how many fragments (paired) mapped to sense/antisense of the reference sequencing, and how many single reads (not paired) mapped to sense/antisense of the reference, what's tools I could use for this purpose?
Thanks.
I am analyzing pair-end RNAseq with tophat, I want to know how many fragments (paired) mapped to sense/antisense of the reference sequencing, and how many single reads (not paired) mapped to sense/antisense of the reference, what's tools I could use for this purpose?
Thanks.