Hi,
I'm trying to filter reads using fastx toolkit.
Command is the following:
fastq_quality_filter -Q33 -q 20 -p 100 -v -i filename_1 -o filename_2
However, I often get two kinds of error message:
Segmentation fault (core dumped)
or
fastq_quality_filter: bug: got empty array at fastq_quality_filter.c:97
It seems to me that segmentation fault I get for files with more than (roughly) 50-60M reads
Is there any limitation for the tool fastq_quality_filter? Any ideas about this issue?
thanks.
I'm trying to filter reads using fastx toolkit.
Command is the following:
fastq_quality_filter -Q33 -q 20 -p 100 -v -i filename_1 -o filename_2
However, I often get two kinds of error message:
Segmentation fault (core dumped)
or
fastq_quality_filter: bug: got empty array at fastq_quality_filter.c:97
It seems to me that segmentation fault I get for files with more than (roughly) 50-60M reads
Is there any limitation for the tool fastq_quality_filter? Any ideas about this issue?
thanks.
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