Hi
I am using rsem-calculate-expression to map (bowtie2) my paired-end data.
I have 6 samples and it has been running for around 36 hours.
However, during the last sample, the system crashed (the _temp file of the last sample is still present).
Can anyone kindly tell as to:
1. How do I find what caused the system crash? I have ubuntu 13.10, 64-bit, 12 GB RAM and 4-cores. I looked up in var/log/ (apport, kernel, messages, system) but could not find any error log.
2. How do I find out the mapping quality (in %)?
Any advice shall be appreciated.
Thanks
Best
M
I am using rsem-calculate-expression to map (bowtie2) my paired-end data.
I have 6 samples and it has been running for around 36 hours.
However, during the last sample, the system crashed (the _temp file of the last sample is still present).
Can anyone kindly tell as to:
1. How do I find what caused the system crash? I have ubuntu 13.10, 64-bit, 12 GB RAM and 4-cores. I looked up in var/log/ (apport, kernel, messages, system) but could not find any error log.
2. How do I find out the mapping quality (in %)?
Any advice shall be appreciated.
Thanks
Best
M