Hello,
I have contigs from a new organism (its genome isn't known well).
I know, that this organism produces some proteins that are similar to proteins of other organisms.
I would like to find an approximate location of a gene that produces a protein similar to other homology protein.
Do you know some good tools or pipelines for that purpose?
A have tried tblastn and SWiPS however I am little confused with the result and don't know how to interpert it
(how to get a linear sequence of supposed gene)
Does anybody have some good advices or an experience in this area?
I have contigs from a new organism (its genome isn't known well).
I know, that this organism produces some proteins that are similar to proteins of other organisms.
I would like to find an approximate location of a gene that produces a protein similar to other homology protein.
Do you know some good tools or pipelines for that purpose?
A have tried tblastn and SWiPS however I am little confused with the result and don't know how to interpert it
(how to get a linear sequence of supposed gene)
Does anybody have some good advices or an experience in this area?
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