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Old 04-20-2012, 05:25 AM   #1
ddaneels
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Location: Belgium

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Default dbSNP download

Hi everyone,

I would like to import the dbSNP database into CLC Bio to use it for filterning. Where can I download this? And which format is the best?

I'm analyzing human exome data.
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Old 07-04-2012, 06:13 PM   #2
gringer
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Have a look at this NCBI document:

Downloading From dbSNP’s FTP Site
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Old 07-04-2012, 07:46 PM   #3
gringer
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Er, that was in response to the topic of this thread, not your post.
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Old 01-24-2013, 02:06 PM   #4
Qwerty0
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Uh, just to make sure future readers are headed in the right direction, dbSNP's database format is a chore to parse. UCSC's version is better for most purposes. It contains less information, but it's in an easy, tab-delimited format:

http://hgdownload.cse.ucsc.edu/golde...hg19/database/
(download snp137Common.txt.gz)

The table description is here:
http://genome.ucsc.edu/cgi-bin/hgTab...e+table+schema
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