Hi,
I'm rather far from the field of computational phylogenetics, so sorry for basic questions.
I have several tens of bacterial species in my sample (just the names, not sequences) and what I want is to build something like tree or cladogram to understand how close they are to each other based on the similarity of their known whole genome sequences.
I mean some tools where I can enter, e.g., gi numbers for the genome sequences of the bacteria of interest, and get a cladogram as output.
Any other advice how to identify and vizualize relationship between number of bacteria would be appreciated (apart from the direct pairwise comparison by BLAST).
Thanks!
I'm rather far from the field of computational phylogenetics, so sorry for basic questions.
I have several tens of bacterial species in my sample (just the names, not sequences) and what I want is to build something like tree or cladogram to understand how close they are to each other based on the similarity of their known whole genome sequences.
I mean some tools where I can enter, e.g., gi numbers for the genome sequences of the bacteria of interest, and get a cladogram as output.
Any other advice how to identify and vizualize relationship between number of bacteria would be appreciated (apart from the direct pairwise comparison by BLAST).
Thanks!
Comment