Hi everybody,
I keep getting the same error when trying to run cuffdiff:
number of labels must match number of conditions.
I have two groups/ treatments with 4 replicates each.
Now, I've read numerous other posts with suggestions like leaving out spaces between commas, etc. but nothing works.
Please help!
I'm using Cufflinks-2.2.1 on Linux.
My Code is:
Thanks!!!
I keep getting the same error when trying to run cuffdiff:
number of labels must match number of conditions.
I have two groups/ treatments with 4 replicates each.
Now, I've read numerous other posts with suggestions like leaving out spaces between commas, etc. but nothing works.
Please help!
I'm using Cufflinks-2.2.1 on Linux.
My Code is:
cuffdiff -p 12 -o ./cuffdiff/ -b /path/to/genome.fa –library-norm-method quartile -L TreatmentA,TreatmentB ./merged/merged/merged.gtf \
./cuffquant/Ctrl_1_abundances.cxb,./cuffquant/Ctrl_5_abundances.cxb,./cuffquant/Ctrl_9_abundances.cxb,./cuffquant/Ctrl_13_abundances.cxb \
./cuffquant/Sample_2_abundances.cxb,./cuffquant/Sample_6_abundances.cxb,./cuffquant/Sample_10_abundances.cxb,./cuffquant/Sample_14_abundances.cxb
./cuffquant/Ctrl_1_abundances.cxb,./cuffquant/Ctrl_5_abundances.cxb,./cuffquant/Ctrl_9_abundances.cxb,./cuffquant/Ctrl_13_abundances.cxb \
./cuffquant/Sample_2_abundances.cxb,./cuffquant/Sample_6_abundances.cxb,./cuffquant/Sample_10_abundances.cxb,./cuffquant/Sample_14_abundances.cxb
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