Hi,
I am trying to detect snp's in a pooled sample of total RNA.I understand that GATK is a very popular tool for variant detection ,SNP & Indel discovery.I would like to know if it is possible to use GATK for pooled RNA samples that have been aligned with reference genome?If yes, is varscan better than GATK?
Thanks,
Joji
I am trying to detect snp's in a pooled sample of total RNA.I understand that GATK is a very popular tool for variant detection ,SNP & Indel discovery.I would like to know if it is possible to use GATK for pooled RNA samples that have been aligned with reference genome?If yes, is varscan better than GATK?
Thanks,
Joji
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