SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
ChIP-Seq: ChIP-Seq Data Analysis: Identification of Protein-DNA Binding Sites with SI Newsbot! Literature Watch 0 12-02-2011 04:51 AM
PubMed: An effective approach for identification of in vivo protein-DNA binding sites Newsbot! Literature Watch 0 02-11-2010 02:10 AM
PubMed: Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq Newsbot! Literature Watch 0 08-08-2008 05:02 AM

Reply
 
Thread Tools
Old 08-04-2019, 10:40 AM   #1
yueli
Member
 
Location: china

Join Date: May 2013
Posts: 70
Default protein dna binding sites

Hello,

I have around 200 protein's fasta file. How can I find these proteins binding site with DNA?

For example:It comes from Wikipedia.

The AP-1 binding site, also known as the AP-1 promoter site, is a DNA sequence to which AP-1 transcription factors are able to bind. The AP-1 binding site, in humans, has a nucleotide sequence of ATGAGTCAT.

Thanks in advance!

Best,

Yue
yueli is offline   Reply With Quote
Old 08-04-2019, 11:24 AM   #2
SNPsaurus
Registered Vendor
 
Location: Eugene, OR

Join Date: May 2013
Posts: 489
Default

Are these proteins DNA-binding proteins, or are you wanting to find which DNA-binding proteins bind to the gene region of these proteins?
__________________
Providing nextRAD genotyping and PacBio sequencing services. http://snpsaurus.com
SNPsaurus is offline   Reply With Quote
Old 08-04-2019, 11:36 AM   #3
yueli
Member
 
Location: china

Join Date: May 2013
Posts: 70
Default

Hello, SNPsaurus,

Thank you so much for your replying.

I want to know the DNA sequencing which can binding to the protein.

Thank you in advance for your great help!

Best,

Yue
yueli is offline   Reply With Quote
Reply

Tags
protein dna binding

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 06:28 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO