Hi all,
I have tried to run the following:
$ cufflinks-2.2.1.Linux_x86_64/cufflinks \
-p 8 \
-o cufflinks_SRR1153278 \
-g genes.gtf \
--library-norm-method classic-fpkm SRR1153278.bam
"I could only see the command-usage on terminal."
--------------------------------------------------------------------
But when I ran the following:
cufflinks-2.2.1.Linux_x86_64/cufflinks \
-p 8 \
-o cufflinks_SRR1153278 \
-g genes.gtf SRR1153278.bam
"I got all the expected output files such as transcripts.gtf, skipped.gtf, isoforms.fpkm_tracking, genes.fpkm_tracking"
---------------------------------------------------------------------
Can anyone help me explaining where was I wrong?
Or if you have faced similar issues please respond.
I have tried to run the following:
$ cufflinks-2.2.1.Linux_x86_64/cufflinks \
-p 8 \
-o cufflinks_SRR1153278 \
-g genes.gtf \
--library-norm-method classic-fpkm SRR1153278.bam
"I could only see the command-usage on terminal."
--------------------------------------------------------------------
But when I ran the following:
cufflinks-2.2.1.Linux_x86_64/cufflinks \
-p 8 \
-o cufflinks_SRR1153278 \
-g genes.gtf SRR1153278.bam
"I got all the expected output files such as transcripts.gtf, skipped.gtf, isoforms.fpkm_tracking, genes.fpkm_tracking"
---------------------------------------------------------------------
Can anyone help me explaining where was I wrong?
Or if you have faced similar issues please respond.