Hello everyone,
I'm using the pipeline of tophat -> cufflinks -> cummeRbund.
Now I'm using cummeRbund, but my conditions are q1 and q2...
My read_groups.info looks like this:
How and in which step I can change this condition?
Is there an option in cufflinks to set this condition?
Or is there an option in cummeRbund to change this condition (with use of the filename)?
I want to have the condition the same as the part before the .merged.bam...
I'm using the pipeline of tophat -> cufflinks -> cummeRbund.
Now I'm using cummeRbund, but my conditions are q1 and q2...
My read_groups.info looks like this:
Code:
file condition replicate_num total_mass norm_mass internal_scale external_scale polymin1.merged.bam q1 0 6.16223e+06 1.56554e+07 0.920662 1 polyplus1.merged.bam q2 0 7.87942e+06 1.56554e+07 1.09299 1
Is there an option in cufflinks to set this condition?
Or is there an option in cummeRbund to change this condition (with use of the filename)?
I want to have the condition the same as the part before the .merged.bam...
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