Hello community,
I would like to merge different VCF files that contain genotype information of a single individual, in one single VCF file containing the information of all of them in different columns.
I am trying to do so by using vcf-merge command from VCFtools. The program seems to work fine when you have your vcf files zipped and indexed, and I do success in getting an vcf file output with each individual in a column of the header BUT the SNP list is completely EMPTY. The file ends in the header.
Any idea about why?
Thanks so much
I would like to merge different VCF files that contain genotype information of a single individual, in one single VCF file containing the information of all of them in different columns.
I am trying to do so by using vcf-merge command from VCFtools. The program seems to work fine when you have your vcf files zipped and indexed, and I do success in getting an vcf file output with each individual in a column of the header BUT the SNP list is completely EMPTY. The file ends in the header.
Any idea about why?
Thanks so much
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