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  • #1

    question related to INDELS

    Hi All,

    I was wondering if there are programs out there that can predict if 6 base pair deletion (INDEL) in the genome is predicted to be deleterious.
    Thanks for your help,
    Tags: None
  • #2
    SIFT might be a program that can help you.

    SIFT - Predict effects of nonsynonmous / missense variants
    http://sift.bii.a-star.edu.sg/
    SIFT, non-synonymous polymorphism, nonsynonymous polymorphisms, Single Nucleotide Polymorphims analysis tool, mutation analysis tool, protein function prediction tool, amino acid substitution effect prediciton tool, human SNPs, human polymorphisms, consequence of amino acid changes, missense mutations, nsSNP, polymorphism, polymorphisms, human genetic variations, human mutagenesis, SNPs analysis tool, genome variant, genomic variation, mutation, coding nonsynonymous variants, effects of amino acid substitutions, affect protein function, deleterious AAS, Deleterious Amino Acid Substitutions, CDS variants, Damaging Amino Acid Substitutions, single nucleotide variants, genome-scale, SIFT predictions, SIFT scores, missense status, in-silico prediction, protein sequence conservation, protein sequence homology, protein homologues, multiple alignment, ng, henikoff, sorting intolerant from tolerant, SNP, bii, gis, bioinformatics, computational biology, SIFT genome tools, single protein tools, protein batch tools, automated prediction tool, algorithm, genotype change, fhcrc, jcvi, Fred Hutchinson Cancer Researcher Center, J. Craig Venter Institute, Genome Institute of Singapore, Bioinformatics Institute

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